acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Lux, Markus ; Krüger, Jan ; Rinke, Christian ; Maus, Irena ; Schlüter, Andreas ; Woyke, Tanja ; Sczyrba, Alexander ; Hammer, BarbaraIn: BMC Bioinformatics, Jg. 17 H. 1Large scale genomic rearrangements in selected Arabidopsis thaliana T-DNA lines are caused by T-DNA insertion mutagenesis
Pucker, Boas ; Kleinbölting, Nils ; Weisshaar, BerndIn: BMC Genomics, Jg. 222021Comparison of Read Mapping and Variant Calling Tools for the Analysis of Plant NGS Data
Schilbert, Hanna ; Rempel, Andreas ; Pucker, BoasIn: Plants, Jg. 9 H. 4Critical assessment of assembly strategies for non-model species mRNA-Seq data and application of next-generation sequencing to the comparison of C-3 and [...]
Bräutigam, Andrea ; Mullick, Thomas ; Schliesky, Simon ; Weber, Andreas P. M.In: Journal of Experimental Botany, Jg. 62 H. 9, S. 3093-3102Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges, Andreas ; Maus, Irena ; Belmann, Peter ; Eikmeyer, Felix Gregor ; Winkler, Anika ; Albersmeier, Andreas ; Pühler, Alfred ; Schlüter, Andreas ; Sczyrba, AlexanderIn: GigaScience, Jg. 4 H. 1Detailed transcriptome analysis of the plant growth promoting Paenibacillus riograndensis SBR5 by using RNA-seq technology
Fernandes de Brito, Luciana ; Irla, Marta ; Kalinowski, Jörn ; Wendisch, Volker F.In: BMC Genomics, Jg. 18 H. 1Effect of the strain Bacillus amyloliquefaciens FZB42 on the microbial community in the rhizosphere of lettuce under field conditions analyzed by whole [...]
Kröber, Magdalena ; Wibberg, Daniel ; Grosch, Rita ; Eikmeyer, Felix Gregor ; Verwaaijen, Bart ; Chowdhury, Soumitra P. ; Hartmann, Anton ; Pühler, Alfred ; Schlüter, AndreasIn: Frontiers in Microbiology, Jg. 5Expanding The Genetic Code
Karsten, Lennard ; Bergen, Daniel ; Drake, Christina ; Dymek, Saskia ; Edich, Maximilian ; Haak, Markus ; Kerkhoff, Denise ; Kerkhoff, Yannic ; Liebers, Michelle ; März, Camilla ; Schlüter, Laura ; Schmidt, Olga ; Vinke, Svenja ; M. Whitford, Christopher ; Pucker, Boas ; Droste, Julian ; Rückert, Christian ; Müller, Kristian ; Kalinowski, Jörn2017Extensive Reannotation of the Genome of the Model Streptomycete Streptomyces lividans TK24 Based on Transcriptome and Proteome Information
Droste, Julian ; Rückert, Christian ; Kalinowski, Jörn ; Hamed, Mohamed Belal ; Anné, Jozef ; Simoens, Kenneth ; Bernaerts, Kristel ; Economou, Anastassios ; Busche, TobiasIn: Frontiers in Microbiology, Jg. 12Fast forward genetics to identify mutations causing a high light tolerant phenotype in Chlamydomonas reinhardtii by whole-genome-sequencing
Schierenbeck, Lisa ; Ries, David ; Rogge, Kristin ; Grewe, Sabrina ; Weisshaar, Bernd ; Kruse, OlafIn: BMC Genomics, Jg. 16 H. 1Genetic Potential of the Biocontrol Agent Pseudomonas brassicacearum (Formerly P. trivialis) 3Re2-7 Unraveled by Genome Sequencing and Mining, Comparative [...]
Nelkner, Johanna ; Tejerizo, Gonzalo Torres ; Hassa, Julia ; Lin, Timo Wentong ; Witte, Julian ; Verwaaijen, Bart ; Winkler, Anika ; Bunk, Boyke ; Spröer, Cathrin ; Overmann, Jörg ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Genes, Jg. 10 H. 8Genome Analyses of the Less Aggressive Rhizoctonia solani AG1-IB Isolates 1/2/21 and O8/2 Compared to the Reference AG1-IB Isolate 7/3/14
Wibberg, Daniel ; Genzel, Franziska ; Verwaaijen, Bart ; Blom, Jochen ; Rupp, Oliver ; Goesmann, Alexander ; Zrenner, Rita ; Grosch, Rita ; Pühler, Alfred ; Schlüter, AndreasIn: Journal of Fungi, Jg. 7 H. 10Genome-wide insights into introgression and its consequences for genome-wide heterozygosity in the Mytilus species complex across Europe
Vendrami, David ; De Noia, Michele ; Telesca, Luca ; Brodte, Eva-Maria ; Hoffman, JosephIn: Evolutionary Applications, Jg. 13 H. 8, S. 2130-2142Genomic and transcriptomic investigation of the physiological response of the methylotroph Bacillus methanolicus to 5-aminovalerate
Haupka, Carsten ; Fernandes de Brito, Luciana ; Busche, Tobias ; Wibberg, Daniel ; Wendisch, Volker F.In: Frontiers in Microbiology, Jg. 12Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus, Irena ; Bremges, Andreas ; Stolze, Yvonne ; Hahnke, Sarah ; Cibis, Katharina G. ; Koeck, Daniela E. ; Kim, Yong S. ; Kreubel, Jana ; Hassa, Julia ; Wibberg, Daniel ; Weimann, Aaron ; Off, Sandra ; Stantscheff, Robbin ; Zverlov, Vladimir V. ; Schwarz, Wolfgang H. ; König, Helmut ; Liebl, Wolfgang ; Scherer, Paul ; McHardy, Alice C. ; Sczyrba, Alexander [...]In: Biotechnology for Biofuels, Jg. 10 H. 1Genomics and Transcriptomics Advance in Plant Sciences
Pucker, Boas ; Schilbert, Hanna ; Singh, Sudhir P. (Hrsg.) ; Upadhyay, Santosh Kumar (Hrsg.) ; Pandey, Ashutosh (Hrsg.) ; Kumar, Sunil (Hrsg.)Genomics and transcriptomics of the industrial acarbose producer Actinoplanes sp. SE50/110
Schwientek, Patrick2012High-throughput sequencing and graph-based cluster analysis facilitate microsatellite development from a highly complex genome
Shah, Abhijeet ; Schielzeth, Holger ; Albersmeier, Andreas ; Kalinowski, Jörn ; Hoffman, JosephIn: Ecology and Evolution, Jg. 16 H. 6, S. 5718-5727Impact of SO2 on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knockout plants analyzed by RNA deep sequencing
Hamisch, Domenica ; Randewig, Doerte ; Schliesky, Simon ; Bräutigam, Andrea ; Weber, Andreas P. M. ; Geffers, Robert ; Herschbach, Cornelia ; Rennenberg, Heinz ; Mendel, Ralf R. ; Hänsch, RobertIn: New Phytologist, Jg. 196 H. 4, S. 1074-1085